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Plant Cell 9(5):689–701Įtchells JP, Mishra LS, Kumar M, Campbell L, Turner SR (2015) Wood formation in trees is increased by manipulating PXY-regulated cell division. Further image processing of segmenting cells and cell membranes was performed with CellProfiler 45 in combination with ilastik 46.
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Turner SR, Somerville CR (1997) Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. Mussadiq Z, Laszlo B, Helyes L, Gyuricza C (2015) Evaluation and comparison of open source program solutions for automatic seed counting on digital images. Jiang Y, Qi X, Chrenek MA, Gardner C, Boatright JH, Grossniklaus HE, Nickerson JM (2013) Functional principal component analysis reveals discriminating categories of retinal pigment epithelial morphology in mice. Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O’Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE (2012) An image analysis toolbox for high-throughput C. National Institutes of Health, Bethesda, MD, USA. Some downstream modules of CellProfiler are capable of processing groups of images in useful ways (e.g., object tracking within a set of images comprising a time series, illumination correction within a set of images comprising an experimental batch, data export for a set of images comprising a plate).
Cellprofiler output during processing software#
Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM (2006) Cell Profiler: image analysis software for identifying and quantifying cell phenotypes. sets into groups that share a common feature.